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1

Lysine supplementation is not effective for the prevention or treatment of feline herpesvirus 1 infection in cats: a systematic review

Bol, Sebastiaan, Bunnik, Evelien M.

Journal:

BMC Veterinary Research

Year:

2015

Language:

english

File:

PDF, 1.74 MB

english, 2015

2

An Introduction to Functional Genomics and Systems Biology

Bunnik, Evelien M., Le Roch, Karine G.

Journal:

Advances in Wound Care

Year:

2013

Language:

english

File:

PDF, 526 KB

english, 2013

3

PuFFIN - a parameter-free method to build nucleosome maps from paired-end reads

Polishko, Anton, Bunnik, Evelien M, Le Roch, Karine G, Lonardi, Stefano

Journal:

BMC Bioinformatics

Year:

2014

Language:

english

File:

PDF, 1.61 MB

english, 2014

4

DNA-encoded nucleosome occupancy is associated with transcription levels in the human malaria parasite Plasmodium falciparum

Bunnik, Evelien M, Polishko, Anton, Prudhomme, Jacques, Ponts, Nadia, Gill, Sarjeet S, Lonardi, Stefano, Le Roch, Karine G

Journal:

Year:

2014

Language:

english

File:

PDF, 1.09 MB

english, 2014

5

Multiple dimensions of epigenetic gene regulation in the malaria parasite Plasmodium falciparum

Ay, Ferhat, Bunnik, Evelien M., Varoquaux, Nelle, Vert, Jean-Philippe, Noble, William Stafford, Le Roch, Karine G.

Journal:

Year:

2015

Language:

english

File:

PDF, 989 KB

english, 2015

6

Analysis of nucleosome positioning landscapes enables gene discovery in the human malaria parasite Plasmodium falciparum

Lu, Xueqing Maggie, Bunnik, Evelien M., Pokhriyal, Neeti, Nasseri, Sara, Lonardi, Stefano, Le Roch, Karine G.

Journal:

Year:

2015

Language:

english

File:

PDF, 1.23 MB

english, 2015

7

The Role of Chromatin Structure in Gene Regulation of the Human Malaria Parasite

Batugedara, Gayani, Lu, Xueqing M., Bunnik, Evelien M., Le Roch, Karine G.

Journal:

Trends in Parasitology

Year:

2017

Language:

english

File:

PDF, 2.14 MB

english, 2017

8

Polysome profiling reveals translational control of gene expression in the human malaria parasitePlasmodium falciparum

Bunnik, Evelien M, Chung, Duk-Won, Hamilton, Michael, Ponts, Nadia, Saraf, Anita, Prudhomme, Jacques, Florens, Laurence, Le Roch, Karine G

Journal:

Year:

2013

Language:

english

File:

PDF, 1.16 MB

english, 2013

9

Detection of Inferred CCR5- and CXCR4-Using HIV-1 Variants and Evolutionary Intermediates Using Ultra-Deep Pyrosequencing

Bunnik, Evelien M., Swenson, Luke C., Edo-Matas, Diana, Huang, Wei, Dong, Winnie, Frantzell, Arne, Petropoulos, Christos J., Coakley, Eoin, Schuitemaker, Hanneke, Harrigan, P. Richard, van 't Wout, An

Journal:

Year:

2011

Language:

english

File:

PDF, 1.80 MB

english, 2011

10

Development of a replication-deficient adenoviral vector-based vaccine candidate for the interception of HPV16- and HPV18-induced infections and disease

Khan, Selina, Oosterhuis, Koen, Wunderlich, Kerstin, Bunnik, Evelien M., Bhaggoe, Melissa, Boedhoe, Satish, Karia, Santusha, Steenbergen, Renske D.M., Bosch, Leontien, Serroyen, Jan, Janssen, Sarah, S

Journal:

International Journal of Cancer

Year:

2017

Language:

english

File:

PDF, 1.26 MB

english, 2017

11

Characterization of cereal toxicity for celiac disease patients based on protein homology in grains

L.Willemijn Vader, Dariusz T Stepniak, Evelien M Bunnik, Yvonne M.C Kooy, Willeke De Haan, Jan Wouter Drijfhout, Peter A Van Veelen, Frits Koning

Journal:

Gastroenterology

Year:

2003

Language:

english

File:

PDF, 178 KB

english, 2003

12

The mRNA-bound proteome of the human malaria parasite Plasmodium falciparum

Bunnik, Evelien M., Batugedara, Gayani, Saraf, Anita, Prudhomme, Jacques, Florens, Laurence, Le Roch, Karine G.

Journal:

Year:

2016

Language:

english

File:

PDF, 2.76 MB

english, 2016

13

Potential functions of atypical memory B cells in Plasmodium-exposed individuals

Braddom, Ashley E., Batugedara, Gayani, Bol, Sebastiaan, Bunnik, Evelien M.

Journal:

International Journal for Parasitology

Year:

2020

File:

PDF, 1.27 MB

2020

14

Adaptation of HIV-1 envelope gp120 to humoral immunity at a population level

Bunnik, Evelien M, Euler, Zelda, Welkers, Matthijs R A, Boeser-Nunnink, Brigitte D M, Grijsen, Marlous L, Prins, Jan M, Schuitemaker, Hanneke

Journal:

Nature Medicine

Year:

2010

Language:

english

File:

PDF, 337 KB

english, 2010

15

PfAlba1: master regulator of translation in the malaria parasite

Bunnik, Evelien M., Le Roch, Karine G.

Journal:

Year:

2015

Language:

english

File:

PDF, 282 KB

english, 2015

16

Escape from autologous humoral immunity of HIV-1 is not associated with a decrease in replicative capacity

Evelien M. Bunnik, Marilie S.D. Lobbrecht, Ad C. van Nuenen, Hanneke Schuitemaker

Journal:

Year:

2010

Language:

english

File:

PDF, 454 KB

english, 2010

17

Intravenous Immunoglobulin (IVIG) Treatment for Modulation of Immune Activation in Human Immunodeficiency Virus Type 1 Infected Therapy-Naive Individuals

Vermeulen, Joost N., Prins, Jan M., Bunnik, Evelien, Hack, C. Erik, Jurriaans, Suzanne, Miedema, Frank, Lange, Joep M.A., Schuitemaker, Hanneke

Journal:

AIDS Research and Human Retroviruses

Year:

2007

Language:

english

File:

PDF, 286 KB

english, 2007

18

Impact of host cell variation on the neutralization of HIV-1 in vitro

Polonis, Victoria R, Schuitemaker, Hanneke, Bunnik, Evelien M, Brown, Bruce K, Scarlatti, Gabriella

Journal:

Current Opinion in HIV and AIDS

Year:

2009

Language:

english

File:

PDF, 147 KB

english, 2009

19

Reconstructing the Dynamics of HIV Evolution within Hosts from Serial Deep Sequence Data

Poon, Art F. Y., Swenson, Luke C., Bunnik, Evelien M., Edo-Matas, Diana, Schuitemaker, Hanneke, van 't Wout, Angélique B., Harrigan, P. Richard, Fraser, Christophe

Journal:

PLoS Computational Biology

Year:

2012

Language:

english

File:

PDF, 867 KB

english, 2012

20

Nanopore sequencing of the fungal Intergenic spacer (IGS) sequence as a potential rapid, diagnostic assay.

Morrison, Gretchen A., Fu, Jianmin, Lee, Grace C., Wiederhold, Nathan P., CaÃ±ete-Gibas, Connie F., Bunnik, Evelien M., Wickes, Brian L.

Journal:

Journal of Clinical Microbiology

Year:

2020

File:

PDF, 1.15 MB

2020

21

Nascent RNA sequencing reveals mechanisms of gene regulation in the human malaria parasite Plasmodium falciparum

Lu, Xueqing Maggie, Batugedara, Gayani, Lee, Michael, Prudhomme, Jacques, Bunnik, Evelien M., Le Roch, Karine G.

Journal:

Nucleic Acids Research

Year:

2017

Language:

english

File:

PDF, 4.09 MB

english, 2017

22

Genome-wide Mapping of DNA Methylation in the Human Malaria Parasite Plasmodium falciparum

Ponts, Nadia, Fu, Lijuan, Harris, Elena Y., Zhang, Jing, Chung, Duk-Won D., Cervantes, Michael C., Prudhomme, Jacques, Atanasova-Penichon, Vessela, Zehraoui, Enric, Bunnik, Evelien M., Rodrigues, Elis

Journal:

Cell Host & Microbe

Year:

2013

Language:

english

File:

PDF, 2.45 MB

english, 2013

23

Naturally Acquired Humoral Immunity Against Plasmodium falciparum Malaria

Gonzales, S. Jake, Reyes, Raphael A., Braddom, Ashley E., Batugedara, Gayani, Bol, Sebastiaan, Bunnik, Evelien M.

Journal:

Frontiers in Immunology

Year:

2020

File:

PDF, 2.13 MB

2020

24

Polymorphism in HIV-1 dependency factor PDE8A affects gene expression and HIV-1 replication in primary macrophages

Thijs Booiman, Sebastiaan Bol, Evelien Bunnik, Perry Moerland, Karel van Dort, Jerome Strauss, Margit Síeberer, Hanneke Schuitemaker, Neeltje Kootstra, Angélique van’t Wout

Journal:

Year:

2011

Language:

english

File:

PDF, 70 KB

english, 2011

25

Polymorphism in HIV-1 dependency factor PDE8A affects mRNA level and HIV-1 replication in primary macrophages

Sebastiaan M. Bol, Thijs Booiman, Evelien M. Bunnik, Perry D. Moerland, Karel van Dort, Jerome F. Strauss III, Margit Sieberer, Hanneke Schuitemaker, Neeltje A. Kootstra, Angélique B. van 't Wout

Journal:

Year:

2011

Language:

english

File:

PDF, 954 KB

english, 2011

26

Editorial Board

Ponts, Nadia, Fu, Lijuan, Harris, Elena Y., Zhang, Jing, Chung, Duk-Won D., Cervantes, Michael C., Prudhomme, Jacques, Atanasova-Penichon, Vessela, Zehraoui, Enric, Bunnik, Evelien M., Rodrigues, Elis

Journal:

Journal of Historical Geography

Year:

1988

Language:

english

File:

PDF, 42 KB

english, 1988

27

Cross‐Reactive Neutralizing Humoral Immunity Does Not Protect from HIV Type 1 Disease Progression

Euler, Zelda, van Gils, Marit J., Bunnik, Evelien M., Phung, Pham, Schweighardt, Becky, Wrin, Terri, Schuitemaker, Hanneke

Journal:

The Journal of Infectious Diseases

Year:

2010

Language:

english

File:

PDF, 3.48 MB

english, 2010

28

The multifunctional autophagy pathway in the human malaria parasite, Plasmodium falciparum

Cervantes, Serena, Bunnik, Evelien M, Saraf, Anita, Conner, Christopher M, Escalante, Aster, Sardiu, Mihaela E, Ponts, Nadia, Prudhomme, Jacques, Florens, Laurence, Le Roch, Karine G

Journal:

Year:

2014

Language:

english

File:

PDF, 1.44 MB

english, 2014

29

Escape of human immunodeficiency virus type 1 from broadly neutralizing antibodies is not associated with a reduction of viral replicative capacity in vitro

Esther D. Quakkelaar, Evelien M. Bunnik, Floris P.J. van Alphen, Brigitte D.M. Boeser-Nunnink, Ad C. van Nuenen, Hanneke Schuitemaker

Journal:

Year:

2007

Language:

english

File:

PDF, 333 KB

english, 2007

30

Changing sensitivity to broadly neutralizing antibodies b12, 2G12, 2F5, and 4E10 of primary subtype B human immunodeficiency virus type 1 variants in the natural course of infection

Evelien M. Bunnik, Marit J. van Gils, Marilie S.D. Lobbrecht, Linaida Pisas, Ad C. van Nuenen, Hanneke Schuitemaker

Journal:

Year:

2009

Language:

english

File:

PDF, 610 KB

english, 2009

31

Dynamic and combinatorial landscape of histone modifications during the intra-erythrocytic developmental cycle of the malaria parasite

Saraf, Anita, Cervantes, Serena, Bunnik, Evelien M, Ponts, Nadia Paule, Sardiu, Mihaela E, Chung, Duk-Won Doug, Prudhomme, Jacques, Varberg, Joseph, Wen, Zhihui, Washburn, Michael Paul, Florens, Laure

Journal:

Journal of Proteome Research

Year:

2016

Language:

english

File:

PDF, 2.07 MB

english, 2016

32

Changes in genome organization of parasite-specific gene families during the Plasmodium transmission stages

Bunnik, Evelien M., Cook, Kate B., Varoquaux, Nelle, Batugedara, Gayani, Prudhomme, Jacques, Cort, Anthony, Shi, Lirong, Andolina, Chiara, Ross, Leila S., Brady, Declan, Fidock, David A., Nosten, Fran

Journal:

Nature Communications

Year:

2018

Language:

english

File:

PDF, 6.65 MB

english, 2018

33

Comparative 3D genome organization in apicomplexan parasites

Bunnik, Evelien M., Venkat, Aarthi, Shao, Jianlin, McGovern, Kathryn E., Batugedara, Gayani, Worth, Danielle, Prudhomme, Jacques, Lapp, Stacey A., Andolina, Chiara, Ross, Leila S., Lawres, Lauren, Bra

Journal:

Proceedings of the National Academy of Sciences

Year:

2019

File:

PDF, 2.17 MB

2019

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